Pengyu Hong

Title

Assistant Professor of Computer Science and of the National Center for Behavioral Genomics

Computer Science

Expertise

Computer Science

Degrees

University of Illinois, Urbana-Champaign, Ph.D.

Tsing Hua University, M.S.

Tsing Hua University, B.S.

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Contact

Email:	hongpeng@brandeis.edu
Phone:	781-736-2729
Office:	Volen, 135

Awards and Honors

Theodore and Hane Norman Junior Faculty Research Leave (2008)

Courses Taught

COSI	101a	Fundamentals of Artificial Intelligence
COSI	123a	Statistical Machine Learning
COSI	178a	Computational Molecular Biology
COSI	230a	Topics in Computational Biology

Scholarship

Karabacak NM, Li L, Tiwari A, Hayward LJ, Hong P, Easterling ML, and Agar AN. "Sensitive and specific identification of wild-type and variant proteins from 8 to 669 kDa using top-down mass spectrometry." Molecular & Cellular Proteomics (2008).

Li L, Kresh JA, Karabacak NM, Cobb JS, Agar JN, and Hong P. "A Hierarchical Algorithm for Calculating the Isotopic Fine Structures of Molecules." Journal of the American Society for Mass Spectrometry 19. 12 (2008): 1867-1874.

Lin C, Mak W, Hong P, Sepp K, Perrimon N.. "Intelligent Interfaces for Mining Large-Scale RNAi-HCS Image Databases." IEEE International Symposium on Bioinformatics and Bioengineering, Boston, MA, USA. October 14-17, 2007.

Sepp KJ, Hong P, Lizarraga SB, Liu JS, Mejia LA, Walsh CA, Perrimon N. "Identification of neural outgrowth genes using genome-wide RNAi.." PLoS Genet. 4. 7 (2008).

Zhou R, Hotta I, Denli AM, Hong P, Perrimon N, and Hannon GJ. "Comparative Analysis of Argonaute-Dependent Small RNA Pathways in Drosophila." Molecular Cell 32. 4 (2008): 592-599.

Hong, Pengyu. "Interactive Analysis of High-Content Cellular Images via Relevant Feedback.." Workshop on Multiscale Biological Imaging, Data Mining and Informatics, Santa Barbara, CA, USA.. Sep 7-8.

Sun, Xiaoyun and Hong, Pengyu. "Computational modeling of Caenorhabditis elegans vulval induction.." Bioinformatics 12. 23 (2007): i499-507.

Kulkarni, M. M., Booker, M., Silver, S. J., Friedman, A., Hong, P., Perrimon, N., Mathey-Prevot, B.. "Evidence of off-target effects associated with long dsRNAs in Drosophila melanogaster cell-based assays." Nature Methods 3. 10 (2006): 833-838.