Hagan Group

Publications

Submitted / Under Revision

  • Fang, H; Tyukodi, B; Rogers, WB; Hagan, MF, “Polymorphic self-assembly of helical tubules is kinetically controlled," submitted, arxiv.2205.11598

  • Joshi, C; Ray, S; Lemma, L; Varghese, M.; Sharp, G; Dogic, Z; Baskaran, A*; Hagan, MF*, “Data- driven discovery of active nematic hydrodynamics," doi.org/10.48550/arXiv.2202.12854

  • Hayakawa, D; Videbæk, TE; Hall, DM; Fang, H; Sigl, C; Feigl, E; Dietz, H; Fraden, S; Hagan, MF; Grason, GM; Rogers, WB, “Geometrically programmed self-limited assembly of tubules using DNA origami colloids," doi.org/10.48550/arXiv.2203.01421

  • Mohajerani F, Tyukodi B, Schlicksup CJ, Hadden-Perilla JA, Zlotnick A, Hagan MF, “Multiscale Modeling of Hepatitis B Virus Capsid Assembly and its Dimorphism," doi.org/10.1101/2022.02.23.481637

  • Asor R, Singaram SW, Levi-Kalisman Y, Hagan MF*, Raviv U*. “Effect of Ionic Strength on the Assembly of Simian Vacuolating Virus Capsid Protein Around Poly(Styrene Sulfonate),"  doi.org/10.1101/2022.02.25.481942

  • Fily, Y; Baskaran, A; Hagan, MF, “Active Particles on Curved Surfaces," in revision, arXiv:1601.00324

Accepted or Published

2024

  • Guo, Jiaqi, Ayisha Zia, Qianfeng Qiu, Michael Norton, Kangqiang Qiu, Junichi Usuba, Zhiyu Liu et al. "Cell-Free Nonequilibrium Assembly for Hierarchical Protein/Peptide Nanopillars." Journal of the American Chemical Society 146, no. 38 (2024): 26102-26112. https://doi.org/10.1021/jacs.4c06775
  • Videbæk, Thomas E., Daichi Hayakawa, Gregory M. Grason, Michael F. Hagan, Seth Fraden, and W. Benjamin Rogers. "Economical routes to size-specific assembly of self-closing structures." Science advances 10, no. 27 (2024): eado5979. https://doi.org/10.1126/sciadv.ado5979
  • Hagan, Michael F., Roya Zandi, and Charlotte Uetrecht. "Overview of the 2023 Physical Virology Gordon Research Conference—Viruses at Multiple Levels of Complexity." Viruses 16, no. 6 (2024): 895. https://doi.org/10.3390/v16060895
  • Duque, Carlos M., Douglas M. Hall, Botond Tyukodi, Michael F. Hagan, Christian D. Santangelo, and Gregory M. Grason. "Limits of economy and fidelity for programmable assembly of size-controlled triply periodic polyhedra." Proceedings of the National Academy of Sciences 121, no. 18 (2024): e2315648121.  https://doi.org/10.1073/pnas.2315648121
  • Tran, Phu N., Sattvic Ray, Linnea Lemma, Yunrui Li, Reef Sweeney, Aparna Baskaran, Zvonimir Dogic, Pengyu Hong, and Michael F. Hagan. "Deep-learning optical flow for measuring velocity fields from experimental data." Soft matter 20, no. 36 (2024): 7246-7257.  https://doi.org/10.1039/D4SM00483C
  • Li, Yunrui, Zahra Zarei, Phu N. Tran, Yifei Wang, Aparna Baskaran, Seth Fraden, Michael F. Hagan, and Pengyu Hong. "A machine learning approach to robustly determine director fields and analyze defects in active nematics." Soft matter 20, no. 8 (2024): 1869-1883.  https://doi.org/10.1039/D3SM01253K
  • Wei, Wei-Shao, Anthony Trubiano, Christian Sigl, Stefan Paquay, Hendrik Dietz, Michael F. Hagan, and Seth Fraden. "Hierarchical assembly is more robust than egalitarian assembly in synthetic capsids." Proceedings of the National Academy of Sciences 121, no. 7 (2024): e2312775121. https://doi.org/10.1073/pnas.2312775121

2022

  • Tyudoki, B; Mohajerani, F; Hall, DM; Grason, GM*, Hagan, MF*, “Thermodynamic size control in curvature-frustrated tubules: Self-limitation with open boundaries,"  ACS Nano (accepted), arxiv:2109.01174

  • Tsidilkovski L; Mohajerani, F; Hagan MF. “Microcompartment assembly around multicomponent fluid cargoes," J. Chem. Phys (accepted), doi.org/10.1101/2022.02.23.481520

  • Videbaek, TE; Fang, H; Hayakawa, D; Tyukodi, B; Hagan, MF; Rogers, WB, “Tiling a tubule: How increasing complexity improves the yield of self-limited assembly,"  J. Phys. Condens. Matter, 34, 134003 (2022), https://dx.doi.org/10.1007/s11071-022-07202-2

  • Wagner, C; Hagan, MF; Baskaran, A, “Steady states of active Brownian particles interacting with boundaries,"  J. Stat. Mech. 013208 (2022), https://doi.org/10.1088/1742-5468/ac42cf, arxiv:2109.06353

2021

  • Peterson, MSE; Baskaran, A; Hagan, MF, “Vesicle shape transformations driven by confined active filaments,"  Nat. Comm., 12, 7247 (2021), link, arXiv:2102.02733

  • Lemma, LM; Norton, MM; DeCamp, SJ; Aghvami, SA; Fraden, S; Hagan, MF; Dogic, Z, "Multiscale dynamics in active nematics,"  Phys. Rev. Lett. 127, 148001 (2021), https://doi.org/10.1103/PhysRevLett.127.148001, arXiv:2006.15184

  • Tayar, AM; Hagan, MF; Dogic, Z, "Active liquid crystals powered by force-sensing DNA-motor clusters,"  Proc. Natl. Acad. Sci. (USA), 118, e2102873118 (2021), https://doi.org/10.1073/pnas.2102873118

  • Merminod, S; Edison, JR; Fang, H; Hagan, MF; Rogers, WB, “Avidity and surface mobility in multivalent ligand-receptor binding," Nanoscale, 13, 12602-12612 (2021), DOI: 10.1039/D1NR02083H

  • Hagan, MF; Grason, GM, “Equilibrium mechanisms of self-limiting assembly,"  Rev. Mod. Phys., 93, 025008 (2021), https://doi.org/10.1103/RevModPhys.93.025008, arXiv:2007.01927

  • Mohajerani, F; Sayer, E; Neil, C; Inlow, K; Hagan, MF, “Mechanisms of scaffold-mediated microcompartment assembly and size-control,"  ACS Nano, 15, 4197–4212 (2021) https://doi.org/10.1021/acsnano.0c05715

  • Sigl, C; Willner, EM; Engelen, W; Sachenbacher, K; Liedl, A; Kolbe, F; Wilsch, F; Aghvami, SA; Protzer, U; Hagan, MF; Fraden, S; Dietz, H, “Programmable icosahedral shells for virus neutralization,"  Nat. Mater., 20, 1281–1289 (2021), DOI:10.1038/s41563-021-01020-4, [link]

  • Chelakkot, R; Hagan, MF; Mahadevan, L; Gopinath, A, “Synchronized oscillations, metachronal waves, and jammed clusters in sterically interacting active filament arrays,"  Soft Matter, 17, 1091-1104, (2021) https://doi.org/10.1039/D0SM01162B

  • Zhou, Z; Joshi, C.; Liu, R; Norton, MM; Lemma, LM; Dogic, Z; Hagan, MF; Fraden S; Hong, P, “Machine Learning Forecasting of Active Nematics," Soft Matter, 17, 738-747 (2021). https://doi.org/10.1039/D0SM01316A, arXiv:2007.14837

2020

2019

  • Joshi, A; Putzig, E; Baskaran, A*; Hagan, MF*, “The interplay between activity and filament flexibility determines the emergent properties of active nematics,"  Soft Matter, 15, 94 (2019), doi:10.1039/C8SM02202J, link

  • Wagner, C; Hagan, MF*; Baskaran, A*, “Response of active Brownian particles to boundary driving,"  PRE, 100, 042610 (2019), https://doi.org/10.1103/PhysRevE.100.042610, arXiv:1905.12706

  • Zuraw-Weston, S; Wood, DA; Torres, IK; Lee, YW; Wang, LS; Jiang, Z; Lázaro, GR; Wang, SY; Rodal, AA; Hagan, MF; Rotello, VR; Dinsmore; AD, “Nanoparticles Binding to Lipid Membranes: from Vesicle-Based Gels to Vesicle Inversion and Destruction," Nanoscale, 11, 1846 (2019), https://doi- org/10.1039/C9NR06570A, arXiv:1805.04214, PMCID PMC7155749

  • Hagan, MF, “Driving assembly far from equilibrium” commentary for the Journal Club for Condensed Matter Physics, 8/2019, https://www.condmatjclub.org

  • Siavashpouri, M; Sharma, P; Fung, J; Hagan, MF; Dogic, Z, “Structure, dynamics and phase behavior of short rod inclusions dissolved in a colloidal membrane," Soft Matter, 15, 7033-7042 (2019), https://doi-org/10.1039/C9SM01064E, arXiv:1906.06551

  • Balchunas, AJ; Cabanas, RA; Zakhary MJ; Gibaud, T; Sharma, P; Hagan MF; Fraden, S; Dogic, Z, “Equation of State of Colloidal Membranes," Soft Matter, 15, p.6791-6802 (2019), DOI:10.1039/C9SM01054H, arXiv:1905.13227

  • Miller, J; Joshi, C; Sharma, P; Baskaran, A; Grason, GM; Hagan, MF; Dogic, Z, “Conformational switching of chiral colloidal rafts regulates raft-raft attractions and repulsions," PNAS, 116, 15792– 15801 (2019), https://doi.org/10.1073/pnas.1900615116

  • Dharmavaram, S; She, B.; Lazaro, GR; Hagan, MF; Bruinsma, R, “Gaussian curvature and the budding kinetics of enveloped viruses," Plos. Comp. Biol, 15, e1006602 (2019), https://doi.org/10.1371/journal.pcbi.1006602

  • Stiller, JB; Kerns, J; Pachov, D; Cho, YJ; Otten, R; Hagan, MF; Kern D “Probing the transition state in enzyme catalysis by high-pressure NMR dynamics," Nat. Catal., 2, 726–734 (2019), https://doi.org/10.1038/s41929-019-0307-6 ; News & Views commentary: https://doi.org/10.1038/s41929-019-0326-3

2018

  • Mohajerani F; Hagan MF “The role of the encapsulated cargo in microcompartment assembly," Plos. Comp. Biol., 14, e1006351 (2018), link, PMC6086489

  • Lazaro, GR; Dragnea, B; Hagan, MF, “Self-assembly of convex particles on spherocylindrical surfaces," Soft Matter, 14, 5728-5740 (2018) DOI: 10.1039/C8SM00129D, link, NIHMS970685

  • Zeng, C; Lazaro, GR; Tsvetkova, I; Hagan, MF*; Dragnea, B*, “Defects and Chirality in the Nanoparticle-Directed Assembly of Spherocylindrical Shells of Virus Coat Proteins," ACS Nano, 12, 5323–5332 (2018), [DOI:10.1021/acsnano.8b00069], NIHMSID 986481

  • Lazaro, GR; Mukhopadhyay, S; Hagan, MF, “Why Enveloped Viruses Need Cores — The Contribution of a Nucleocapsid Core to Viral Budding," Biophys. J., 114, 619-630 (2018), link

  • Norton, MM; Baskaran, A; Opathalage, A; Langeslay, B; Fraden, S; Baskaran, A*; Hagan, MF* “Insensitivity of active nematic liquid crystal dynamics to topological constraints," Phys. Rev. E, 97, 012702 (2018), link

2017

  • Michaels, TCT; Bellaiche, MMJ; Hagan, MF; Knowles, TPJ, “Kinetic constraints on the self- assembly of building blocks into closed supramolecular structures," Sci. Reports, 7, 12295 (2017), [link]

  • Fily, Y; Baskaran, A; Hagan, MF, “Equilibrium mappings in polar-isotropic confined active particles," Eur. Phys. J. E 40, 61 (2017). doi:10.1140/epje/i2017-11551-3, arXiv:1612.08719

  • Sakhardande, R., Stanojeviea, S., Baskaran, A., Baskaran, A., Hagan, M.F.*, Chakraborty, B., “Theory of microphase separation in bidisperse chiral membranes.” Phys. Rev. E, 96, 012704 (2017), arXiv:1604.03012, https://doi.org/10.1103/PhysRevE.96.012704

  • Wagner, CG; Hagan, MF; Baskaran, A, “Steady-state distributions of ideal active Brownian particles under confinement and forcing," J. Stat. Mech., 043203 (2017), http://iopscience.iop.org/article/10.1088/1742- 5468/aa60a8/meta

  • Liu, K; Hagan, MF; Lisman, JE, “Gradation (~10 size states) of synaptic strength by quantal addition of structural modules” Phil. Trans. R. Soc. B, 372, 20160328 (2017) [link]

2016

  • Redner, GS; Wagner, CG; Baskaran, A; Hagan, MF, “A classical nucleation theory description of active colloid assembly," Phys. Rev. Lett., 117, 148002, [link] (2016), arXiv:1603.01362

  • Yu, N; Ghosh, A; Hagan, MF, “Faceted particles formed by the frustrated packing of anisotropic colloids on curved surfaces," Soft Matter, 12, 8990 (2016), [cover article] NIHMSID 846122 http://dx.doi.org/10.1039/C6SM01498D

  • Perlmutter JD; Mohajerani, F; Hagan, MF, Many-molecule encapsulation by an icosahedral shell, eLife 5, e14078 (2016); http://dx.doi.org/10.7554/eLife.14078

  • Lazaro, GR; Hagan, MF, “Allosteric control in icosahedral capsid assembly," J. Phys. Chem B, 120, 6306-6318 [Bill Gelbart Festschrift] [link] (2016) PMCID 5367391

  • Perkett, M.R.; Mirijanian, D.T.; Hagan, M.F., “The Allosteric Switching Mechanism in Bacteriophage MS2," J. Chem. Phys. 145, 035101 [cover article],[link], arXiv:1503.01204 (2016). PMC4947040

  • Xie, S; Pelcovits, RA*; Hagan, MF*, “Probing a self-assembled fd virus membrane with a microtubule,"  Phys. Rev. E, 93, 062608, [link] arXiv:1512.02204 (2016)

  • Xie, S; Hagan, MF*; Pelcovits, RA*, “Interaction of chiral rafts in self-assembled colloidal membranes,"  Phys. Rev. E, 93, 032706 (2016), [link] arXiv:1601.08232

  • Hagan MF; Zandi, R, “Recent advances in coarse-grained modeling of virus assembly," Curr Opin Virol, 18, 36-43 (2016) [link] NIHMSID 772743

  • Hagan MF; Baskaran A, “Emergent self-organization in active materials," Curr Opin Cell Biol, 38, 74-80 (2016) [link] NIHMS 772743

2015

  • Kelley, CF; Messelaar, EM; Eskin, T; Wang, S; Song, K; Vishnia, K; Becalska, AN; Shupliakov, O; Hagan, MF; Danino, D; Sokolova, O; Nicastro, D; Rodal, AA, “Membrane charge directs the outcome of F-BAR domain lipid binding and autoregulation," Cell Reports, 13, 2597–2609 (2015) [link]

  • Perlmutter, J.D.; Hagan, M.F., “Mechanisms of Virus Assembly," Annu. Rev. Phys. Chem., 66, 217-39 (2015), [link], arXiv:1407.3856

  • Ruiz-Herrero, T., Hagan, M.F., “Simulations show that Virus Assembly on a Membrane is Facilitated by Membrane Microdomains," Biophys. J., 108, 585-595 (2015), arXiv:1403.2269,  PMCID 4317536

  • Perlmutter, J.D.; Hagan, M.F., “The role of packaging sites in efficient and specific virus assembly," J. Mol. Biol., 427, 2451–2467 (2015), doi:10.1016/j.jmb.2015.05.008  NIHMSID 691930

  • DeCamp, SJ; Redner, G; Baskaran, A; Hagan, MF*; Dogic, Z*, “Orientational order of motile defects in active nematics," Nature Mater., 14, 1110–1115 (2015) [link]

  • Fily, Y; Baskaran, A; Hagan, MF, “Dynamics and density distribution of strongly confined noninteracting nonaligning self-propelled particles in a nonconvex boundary," Phys. Rev. E, 91, 012125 (2015), [link], arXiv:1410.5151

  • Pontiggia, F; Pachov, D; Clarkson, M; Villali, J; Hagan, MF; Pande, V; Kern, D, “Free energy landscape of activation in a signaling protein at atomic resolution," Nat. Comm., 6, 7284 (2015) doi:10.1038/ncomms8284, [link], PMCID: PMC4470301

  • Hilitski, F.; Ward, AR; Cajamarca, L; Hagan, MF; Grason, GM; Dogic, Z, “Measuring cohesion between macromolecular filaments, one pair at a time: Depletion-induced microtubule bundling," Phys. Rev. Lett., 114, 138102 (2015), arXiv:1408.5068

  • Kerns, SJ; Agafonov, RV; Cho, YJ; Pontiggia, F; Otten, R; Pachov, DV; Kutter, S; Phung, LA; Murphy, PN; Thai, V; Alber T; Hagan, MF; Kern, D, “The energy landscape of adenylate kinase during catalysis," Nat. Struct. Mol. Biol. 22, 124–131 (2015) doi:10.1038/nsmb.2941, [link] PMCID: PMC4318763

2014

  • Sharma, P; Ward, AR; Gibaud, T; Hagan, MF; Dogic, Z, “Hierarchical organization of chiral rafts in colloidal membranes," Nature, 513, 77–80 (2014) [link]

  • Perlmutter, J.D.; Perkett, M.R.; Hagan, M.F., “Pathways for virus assembly around nucleic acids," J. Mol. Biol., 426, 3148–3165 (2014), [link], PMC4135015

  • Fily, Y., Baskaran, A., Hagan, M.F. “Dynamics of Self-Propelled Particles Under Strong Confinement," Soft Matter, 10, 5609-5617 (2014) [link], arXiv:1402.5583

  • Perkett, M.R., Hagan, M.F., "Using Markov State Models to Study Self-Assembly," J. Chem. Phys., 214101 (2014), [link] PMCID: PMC4048447 [Cover Article]

  • Villali, J., Pontiggia, F., Clarkson, M.W., Hagan, M.F., Kern, D. “Evidence against the ‘Y-T coupling’ mechanism of activation in the response regulator NtrC," J. Mol. Biol, 426, 1554–1567, (2014), doi: 10.1016/j.jmb.2013.12.027, PMC4384162

  • Chelakkot, R.; Gopinath, A; Mahadevan, L.*; Hagan, M.F.*, “Flagellar dynamics of a connected chain of active, Brownian particles," J.R. Soc. Interface, 11, 20130884 (2014) (http://dx.doi.org/10.1098/rsif.2013.0884)

2013

  • Perlmutter, J.D.; Qiao, C.; Hagan, M.F. “Viral genome structures are optimal for capsid assembly," eLife, 2:e00632 (2013) http://elife.elifesciences.org/content/2/e00632; PMC3683802

  • Redner, G.; Baskaran, A.; Hagan, M.F., “Reentrant Phase Behavior in Active Colloids with Attraction,"  Phys. Rev. E, 88, 012305 (2013), [Subject of a Physical Review Focus, Physics 6, 134 (2013)]

  • Hagan, M.F. “Modeling Viral Capsid Assembly," Adv. Chem. Phys., 155, Ch 1, 1-68 (2014), arXiv:1301.1657  [invited review article] PMC4318123

  • Redner, G., Hagan, M.F.*, Baskaran, A*., “Structure and Dynamics of a Phase-Separating Active Colloidal Fluid," Phys. Rev. Lett., 110, 055701 (2013), arXiv:1207.1737 * co-corresponding author

2012

  • Yu, N., Hagan, M.F., “Simulations of HIV capsid protein dimerization reveal the effect of chemistry and topography on the mechanism of hydrophobic protein association” Biophys. J. 103, 1363-1369 (2012) [Featured Article]

  • Ruiz-Herrero, T., Velasco, E., Hagan, M.F., “Mechanisms of budding of nanoscale particles through lipid bilayers” J. Phys. Chem B, 116, 9595-603 (2012) arXiv:1202.4691

  • Giomi L., Mahadevan L., Chakraborty, B., and Hagan, M.F. “Banding, excitability and chaos in active nematic suspensions," Nonlinearity, 25, 2245–2269 (2012) [link]

  • Dhason, M.S, Wang, J.C., Hagan, M.F., Zlotnick, A. “Differential assembly of Hepatitis B Virus core protein on single- and double-stranded nucleic acid suggests the dsDNA-filled core is springloaded," Virology, 430, 20-29 (2012)

  • Gopinath, A., Hagan, M.F., Marchetti, M.C., Baskaran, A. “Dynamical Self-regulation in Self- propelled Particle Flows," Phys. Rev. E, 85, 061903 (2012)

  • Ni, P., Wang, Z., Ma, X., Das, N.C., Sokol, P., Chiu, W., Dragnea, B., Hagan, M.F.*, Kao, C.C*., “An Examination of the Electrostatic Interactions between the N-Terminal Tail of the Coat Protein and RNA in Brome Mosaic Virus," J. Mol. Biol., 419, 284-300 (2012) *co-corresponding author

  • Patel, A.J; Varilly, P.; Jamadagni, S.N.; Hagan, M.F.; Chandler, D.; and Garde, S. “Sitting at the edge: How biomolecules use hydrophobicity to tune their interactions and function," J. Phys. Chem. B, 116, 2498-2503 (2012), arXiv:1109.4431

  • Gibaud, E. Barry, M. Zakhary, A. Ward, C. Berciu, Y. Yang, M.F. Hagan, R. Oldenbourg, D. Nicastro, R. Meyer, Z. Dogic. “Reconfigurable self-assembly through chiral control of interfacial tension," Nature, 481, 348-351 (2012)

  • McCandlish, S.R, Baskaran, A., and Hagan, M.F. “Spontaneous Segregation of Self-Propelled Particles with Different Motilities," Soft Matter, 8, 2527-2534 (2012), [link] arXiv:1110.2479

  • Yang Y., Barry E., Dogic Z. and Hagan, M.F. “Self-assembly of 2D membranes from mixtures of hard rods and depleting polymers," Soft Matter, 8, 707 (2012), [link], arXiv:1103.2760

2011

  • Yang Y. and Hagan, M.F. “Theoretical calculation of the phase behavior of colloidal membranes," Phys. Rev. E, 84, 051402 (2011)

  • Hagan, M.F., Elrad O.M., and Jack R.L. “Mechanisms of kinetic trapping in self-assembly and phase transformation," J. Chem. Phys, 135, 104115 (2011)

  • Giomi L., Mahadevan L., Chakraborty, B., and Hagan, M.F. “Excitable Patterns in Active Nematics," Phys. Rev. Lett 106, 218101 (2011)

  • Sumedha; Hagan, M.F.; Chakraborty, B. “Prolonging assembly through dissociation: A self-assembly paradigm in microtubules," Phys. Rev. E, 83, 051904 (2011)

2010

  • Elrad O.M.; Hagan, M.F. “Encapsulation of a Polymer by an Icosahedral Virus," Phys. Biol., 7, 045003 (2010), Part of a special focus issue on physical virology.

  • Yang, Y.; Meyer, R.B.; Hagan, M.F. “Self-limited self-assembly of chiral filaments," Phys. Rev. Lett., 104, 258102 (2010)

  •  Kivenson, A.; Hagan, M.F. “Mechanisms of Capsid Assembly around a Polymer," Biophys. J, 99, 619-628 (2010)

  • Hagan, M.F. and Elrad O.M. “Understanding the Concentration Dependence of Viral Capsid Assembly Kinetics — the Origin of the Lag Time and Identifying the Critical Nucleus Size," Biophys. J, 98, 1065-1074 (2010)

2009

  • Hagan, M.F. “A theory for viral capsid assembly around electrostatic cores,"  J. Chem. Phys., 130, 114902 (2009)

  • Huang, F.; Addas, K.; Ward, A ; Flynn, N.T.; Hagan, M.F.; Dogic, Z.; Fraden, S. “The pair potential of colloidal stars,"  Phys. Rev. Lett., 102, 108302 (2009)

  • Whitelam, S.; Feng, E.H.; Hagan, M.F.; Geissler, P.L. “The role of collective motion in examples of coarsening and self-assembly," Soft Matter, 6, 1251-1262 (2009) (Special issue on Self-Assembly)

2008

  • Elrad, O.M.; Hagan, M.F. “Mechanisms of size control and polymorphism in viral capsid assembly," Nano Letters, 8, 3850-3857 (2008)

  • Hagan, M.F. “Controlling viral capsid assembly with templating," Phys. Rev. E, 77, 051904 (2008)

Publications from postdoctoral and graduate work

  • Jack, R.L.; Hagan, M.F.; Chandler, D. “Fluctuation-dissipation ratios in the dynamics of self- assembly," Phys. Rev. E, 76, 021119 (2007)

  • Hagan, M.F.; Chandler, D. “Dynamic Pathways for Viral Capsid Assembly," Biophys. J., 91,42 (2006)

  • Hagan, M.F.; Chakraborty, A.K. “Hybridization Dynamics of Surface Immobilized DNA,"  J. Chem. Phys., 120, 4958 (2004)

  • Hagan, M.F.; Dinner, A.R.; Chandler, D.; Chakraborty, A.K. “Atomistic Understanding of Kinetic Pathways for Single Base-Pair Binding and Unbinding in DNA,"  Proc. Natl. Acad. Sci. USA, 100, 13922 (2003)

  • Hagan, M.F.; Majumdar, A.; Chakraborty, A.K. “Nanomechanical Forces Generated by Surface Grafted DNA,"  J. Phys. Chem. B, 106, 10163 (2002)

  • Wu, G.; Haifeng, J.; Hansen, K.; Thundat, T.; Datar, R.; Cote, R.; Hagan, M.F.; Chakraborty, A.K.; Majumdar, A. “Origin of Nanomechanical Cantilever Motion Generated from Biomolecular Interactions," Proc. Natl. Acad. Sci. USA, 98, 1560 (2001).